BioLLM
Getting Started:
Introduction
Installation
Tutorials:
BioLLM: Cell Embedding Generation from scFM Models (Zero-Shot) Task
BioLLM: Gene Regulatory Network (GRN) Task
BioLLM: CellType Annotation
BioLLM: DrugSensitivity Task
Integration of Novel Models into the BioLLM Framework: A Step-by-Step Guide
API Reference:
Base Modules
biollm.tasks.bio_task
biollm.loader.load_llm
biollm.loader.scbert
biollm.loader.scfoundation
biollm.loader.scgpt
biollm.loader.geneformer
biollm.loader.cellplm
Release:
Release Notes
References:
Download Links for Pre-trained Models and Gene Vocabulary
BioLLM
Base Modules
View page source
Base Modules
biollm.tasks.bio_task
biollm.loader.load_llm
biollm.loader.scbert
biollm.loader.scfoundation
biollm.loader.scgpt
biollm.loader.geneformer
biollm.loader.cellplm